nipt_bcl2fastq

nipt_bcl2fastq(
    *,
    nipt_folders: str | list[str],
    nipt_part: str,
    fastq_names: str | list[str],
    output_folder: str,
    source_path: str,
    bcl_path: str,
    num_readers: int = 10,
    num_writers: int = 10,
    num_processors: int = 40,
    compression_level: int = 8,
) -> None

Run bcl2fastq conversion for multiple BCL folders, upload resulting fastqs to the server.

Parameters:

Name	Type	Description	Default
nipt_folders	str | list[str]	Nipt folders.	required
nipt_part	str	Part number.	required
fastq_names	str | list[str]	Fastq sample names - For example 24B3043312	required
output_folder	str	Path to the output Fastq folder.	required
num_readers	int	Number of readers.	10
num_writers	int	Number of writers.	10
num_processors	int	Number of processors.	40
compression_level	int	Compression level.	8
source_path	str	Path to the source folder.	required
bcl_path	str	Path to the bcl folder.	required