compile_bam_stats ¶

compile_bam_stats(
    root_directory: str, output_csv: str
) -> None

Complies BAM stats to CSV.

Parameters:

Name	Type	Description	Default
`root_directory`	`str`	Root directory for the operations.	required
`output_csv`	`str`	Output csv file	required

compile_reports_to_csv ¶

compile_reports_to_csv(root_dir: str, output_csv: str)

Compile all .coverage.report files into a single CSV.

find_coverage_report_files(root_dir)

Recursively find all .coverage.report files in a directory.

parse_coverage_report(file_path)

Parse a .coverage.report file and return a dictionary of its contents.