nipt_bcl2fastq

Usage

bip nipt_bcl2fastq [-h] --folders FOLDERS [FOLDERS ...] --part PART --names NAMES [NAMES ...]
                   --output-folder OUTPUT_FOLDER [--num-readers NUM_READERS] [--num-writers NUM_WRITERS]
                   [--num-processors NUM_PROCESSORS] [--compression-level COMPRESSION_LEVEL] --bcl-path
                   BCL_PATH --source-path SOURCE_PATH

Options

Option	Alias	Required	Description
-h, --help		No	Show this help message and exit
--folders FOLDERS [FOLDERS ...]	-f	Yes	NIPT folders.
--part PART	-p	Yes	NIPT Part number.
--names NAMES [NAMES ...]	-n	Yes	Fastq sample names - For example 24B3043312.
--output-folder OUTPUT_FOLDER	-o	Yes	Path to the output Fastq folder.
--num-readers NUM_READERS	-r	No	Number of readers.
--num-writers NUM_WRITERS	-w	No	Number of writers.
--num-processors NUM_PROCESSORS	-np	No	Number of processors.
--compression-level COMPRESSION_LEVEL	-cl	No	Compression level.
--bcl-path BCL_PATH	-b	Yes	Path to the BCL folder.
--source-path SOURCE_PATH	-s	Yes	Path to