BIPACKAGE

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BIPACKAGE

Installation
BIP API
BIP API
- Bamtools
  Bamtools
  - bam_counts
  - compile_bam_stats
- Bedtools
  Bedtools
  - bedfilegenerator
- Fastqtools
  Fastqtools
- ittools
  ittools
- NiptTools
  NiptTools
  - nipt_bcl2fastq
BIP CLI
BIP CLI
- Bamtools
  Bamtools
  - bam_counts
  - compile_bam_stats
- Bedtools
  Bedtools
  - bedfilegenerator
- Fastqtools
  Fastqtools
- ittools
  ittools
- NiptTools
  NiptTools
  - nipt_bcl2fastq
BIPIPE CLI
BIPIPE CLI
- Pipelines
  Pipelines
  - bwa_dedup
  - cnv
  - cnv_pon
  - gatk_gcnv
  - snv_indel
- Utility
  Utility
  - get-config

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import bipackage as bip

bip.<function>(*args,**kwargs)